Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB85531.1KEGG: app:CAP2UW1_0424 hypothetical protein. (405 aa)    
Predicted Functional Partners:
AEB85532.1
Hypothetical protein.
       0.675
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.638
AEB83036.1
PFAM: Fimbrial assembly; KEGG: aav:Aave_4153 fimbrial assembly family protein.
  
     0.521
AEB86714.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: lch:Lcho_2906 hypothetical protein.
  
     0.495
AEB82913.1
PFAM: Protein of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein.
  
     0.476
AEB82501.1
Peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan binding-like; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein.
  
     0.472
AEB82646.1
Peptidase C1A papain; KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal.
  
     0.460
AEB83269.1
NGG1p interacting factor 3 protein, NIF3; KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3.
  
  
 0.451
AEB84463.1
PFAM: Protein of unknown function DUF1566; KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566.
  
     0.440
AEB84650.1
PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: dac:Daci_2483 hypothetical protein.
    
   0.429
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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