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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85639.1KEGG: ajs:Ajs_1585 putative EA31 gene protein, phage lambda. (281 aa)    
Predicted Functional Partners:
AEB85640.1
KEGG: ajs:Ajs_1584 putative EA59 gene protein, phage lambda.
 
   
 0.957
AEB85641.1
Hypothetical protein; Manually curated; KEGG: dia:Dtpsy_2166 hypothetical protein.
       0.495
AEB85642.1
KEGG: rfr:Rfer_1072 hypothetical protein.
       0.495
AEB83966.1
TRAG family protein; PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG.
   
 
 0.445
AEB84169.1
KEGG: tmz:Tmz1t_0963 hypothetical protein; manually curated; TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1.
   
 
 0.445
AEB84289.1
TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; KEGG: rpf:Rpic12D_0673 hypothetical protein.
   
 
 0.445
AEB85142.1
TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein.
   
 
 0.445
AEB85674.1
TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein.
   
 
 0.445
AEB85643.1
Gp37Gp68 family protein; PFAM: Phage Gp37Gp68; KEGG: dia:Dtpsy_2170 Gp37Gp68 family protein.
       0.429
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.405
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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