Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AEB85681.1KEGG: ajs:Ajs_1541 TraL family protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL. (99 aa)    
Predicted Functional Partners:
AEB85682.1
TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE.
     
 0.759
AEB85686.1
KEGG: ajs:Ajs_1536 hypothetical protein; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV.
     
 0.754
AEB85683.1
KEGG: ajs:Ajs_1539 hypothetical protein.
       0.748
AEB85684.1
KEGG: ajs:Ajs_1538 TraB pilus assembly family protein.
       0.748
AEB85689.1
Conjugative transfer signal peptidase TraF; KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region.
       0.747
AEB85685.1
Disulfide bond isomerase, DsbC/G; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
       0.746
AEB85687.1
TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein.
     
 0.746
AEB85692.1
TraU family protein; PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein.
     
 0.739
AEB85688.1
KEGG: ajs:Ajs_1534 hypothetical protein.
       0.736
AEB85694.1
KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN.
     
 0.735
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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