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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85695.1KEGG: ajs:Ajs_1527 hypothetical protein. (129 aa)    
Predicted Functional Partners:
AEB85694.1
KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN.
       0.784
AEB85691.1
TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site.
       0.774
AEB85692.1
TraU family protein; PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein.
       0.774
AEB85693.1
KEGG: ajs:Ajs_1529 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC.
       0.774
AEB85690.1
KEGG: ajs:Ajs_1532 hypothetical protein.
       0.770
AEB85696.1
TraF-like protein; KEGG: ajs:Ajs_1526 hypothetical protein; TIGRFAM: Type IV conjugative transfer system protein TraF; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant.
       0.765
AEB85689.1
Conjugative transfer signal peptidase TraF; KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region.
       0.758
AEB85688.1
KEGG: ajs:Ajs_1534 hypothetical protein.
       0.755
AEB85697.1
TraH family protein; PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein.
       0.755
AEB85682.1
TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE.
       0.754
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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