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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85706.1LemA family protein; PFAM: LemA; KEGG: ajs:Ajs_1511 LemA family protein. (204 aa)    
Predicted Functional Partners:
AEB85707.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1510 hypothetical protein.
 
  
 0.959
AEB85708.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1509 hypothetical protein.
 
     0.923
AEB85081.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2693 hypothetical protein.
 
  
 0.829
AEB82817.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein.
 
  
 0.828
AEB85705.1
PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1512 major facilitator superfamily transporter.
     
 0.792
AEB85712.1
KEGG: ajs:Ajs_1505 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.
  
  
 0.735
AEB85711.1
Ribose-phosphate pyrophosphokinase; KEGG: ajs:Ajs_1506 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family.
  
    0.723
AEB85710.1
KEGG: ajs:Ajs_1507 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal.
       0.700
AEB85709.1
KEGG: ajs:Ajs_1508 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like.
       0.689
AEB85713.1
KEGG: dba:Dbac_2177 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase.
       0.688
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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