Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB85707.1PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1510 hypothetical protein. (294 aa)    
Predicted Functional Partners:
AEB85706.1
LemA family protein; PFAM: LemA; KEGG: ajs:Ajs_1511 LemA family protein.
 
  
 0.959
AEB85708.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1509 hypothetical protein.
 
     0.947
AEB82818.1
LemA family protein; PFAM: LemA; KEGG: aav:Aave_0381 LemA family protein.
 
  
 0.831
AEB85082.1
LemA family protein; PFAM: LemA; KEGG: ajs:Ajs_2694 LemA family protein.
 
  
 0.831
AEB86273.1
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
   0.793
AEB82816.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein.
 
     0.777
AEB85080.1
PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2692 hypothetical protein.
 
     0.777
AEB85705.1
PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1512 major facilitator superfamily transporter.
       0.773
AEB85712.1
KEGG: ajs:Ajs_1505 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.
   
   0.725
AEB85709.1
KEGG: ajs:Ajs_1508 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like.
       0.689
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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