Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB85751.1KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core. (660 aa)    
Predicted Functional Partners:
AEB86738.1
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.819
AEB85752.1
PFAM: Acetone carboxylase, gamma subunit-related; KEGG: eba:ebA4702 acetone carboxylase gamma subunit.
 
   
 0.748
AEB85753.1
PFAM: Hydantoinase B/oxoprolinase; KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase.
 
   
 0.736
AEB85754.1
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: reu:Reut_C6172 acetone carboxylase, beta subunit.
 
     0.710
acpS
Phosphopantetheine-protein transferase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
  
    0.432
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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