Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB85760.1PFAM: Peptidase A2A, retrovirus RVP subgroup; KEGG: ajs:Ajs_2751 hypothetical protein. (215 aa)    
Predicted Functional Partners:
AEB85759.1
PFAM: Protein of unknown function DUF520; KEGG: ajs:Ajs_2750 putative nucleotide-binding protein; Belongs to the UPF0234 family.
       0.831
AEB85761.1
KEGG: dia:Dtpsy_2242 putative metal dependent phosphohydrolase.
       0.687
AEB86207.1
CheW protein; KEGG: ajs:Ajs_3576 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein.
  
     0.640
AEB83361.1
Hypothetical protein; Manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein.
  
     0.638
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.628
AEB86390.1
KEGG: dia:Dtpsy_2992 hypothetical protein.
  
     0.615
AEB84774.1
PFAM: Glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin.
 
     0.590
AEB83215.1
PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP.
  
     0.573
AEB83677.1
KEGG: dia:Dtpsy_2621 putative transmembrane protein.
 
     0.563
AEB82745.1
KEGG: dia:Dtpsy_0229 hypothetical protein.
  
     0.549
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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