Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB85813.1PFAM: Peptidase S58, DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA. (337 aa)    
Predicted Functional Partners:
AEB85814.1
KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein.
       0.842
AEB85812.1
PFAM: Protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411.
       0.700
AEB85811.1
PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein.
       0.596
AEB85810.1
KEGG: dia:Dtpsy_1211 hypothetical protein.
       0.422
AEB87005.1
PFAM: Guanine-specific ribonuclease N1/T1; KEGG: dia:Dtpsy_3466 guanine-specific ribonuclease N1 and T1.
 
     0.407
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.405
AEB85809.1
KEGG: dia:Dtpsy_1212 protein of unknown function DUF161; manually curated; PFAM: Protein of unknown function DUF161.
       0.401
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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