STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85814.1KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein. (443 aa)    
Predicted Functional Partners:
AEB85813.1
PFAM: Peptidase S58, DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA.
       0.837
AEB85812.1
PFAM: Protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411.
       0.659
AEB83167.1
PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L.
  
     0.628
AEB85811.1
PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein.
       0.589
AEB86873.1
PFAM: Protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein.
  
     0.583
AEB86845.1
Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_3342 sporulation domain protein.
  
     0.554
AEB85566.1
PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein.
  
    0.543
AEB86390.1
KEGG: dia:Dtpsy_2992 hypothetical protein.
  
     0.527
AEB82878.1
PFAM: Domain of unknown function DUF399; KEGG: dia:Dtpsy_0421 protein of unknown function DUF399.
  
    0.503
AEB83169.1
KEGG: ajs:Ajs_0672 hypothetical protein.
  
     0.473
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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