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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85847.1PFAM: UspA; KEGG: dia:Dtpsy_2423 UspA domain protein. (131 aa)    
Predicted Functional Partners:
AEB82754.1
PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein.
 
   
 0.488
AEB86556.1
KEGG: dia:Dtpsy_3119 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein.
  
     0.471
AEB85846.1
Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: dia:Dtpsy_2422 hypothetical protein.
  
    0.452
purM
TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein.
     
 0.418
dksA
Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
 
  
 0.416
AEB84829.1
KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein; PFAM: RelA/SpoT; SMART: RelA/SpoT.
  
     0.404
AEB86781.1
KEGG: dia:Dtpsy_3275 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein.
  
  
 0.402
AEB86815.1
PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; KEGG: dia:Dtpsy_3312 ribosomal subunit interface protein, putative.
  
  
 0.402
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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