Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB85848.1KEGG: ajs:Ajs_2998 hypothetical protein. (282 aa)    
Predicted Functional Partners:
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.787
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.601
AEB87006.1
PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor).
  
     0.570
AEB83238.1
KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.561
AEB82893.1
PFAM: Protein of unknown function DUF3567; KEGG: ajs:Ajs_0446 hypothetical protein.
  
     0.557
AEB83050.1
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family.
  
     0.433
AEB86613.1
KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal.
  
     0.416
AEB86010.1
KEGG: dia:Dtpsy_2705 hypothetical protein.
 
     0.410
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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