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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85870.1Protein of unknown function UPF0153; PFAM: Uncharacterised protein family UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein. (115 aa)    
Predicted Functional Partners:
AEB85868.1
KEGG: bmj:BMULJ_04805 hypothetical protein.
       0.545
AEB85869.1
PFAM: Protein of unknown function DUF2945; KEGG: pde:Pden_4005 hypothetical protein.
       0.545
AEB86541.1
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
  
   0.543
AEB85270.1
PFAM: Peptidase U32; KEGG: dia:Dtpsy_1589 peptidase U32.
  
     0.472
AEB85745.1
Sporulation domain-containing protein; PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_2228 sporulation domain protein.
 
     0.404
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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