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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85876.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_03752 LysR family regulatory helix-turn-helix protein 123. (332 aa)    
Predicted Functional Partners:
AEB85877.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein.
     
 0.777
AEB85878.1
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: axy:AXYL_03755 binding-protein-dependent transport system inner membrane component family protein 46.
       0.773
AEB85879.1
SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.
       0.773
AEB85880.1
SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: axy:AXYL_03757 oligopeptide/dipeptide abc transporter, ATP-binding protein, C-terminal domain-containing protein 6; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.
       0.773
AEB83798.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0788 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.762
AEB82452.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.745
AEB86811.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xtr:100494792 uncharacterized HTH-type transcriptional regulator ywbI-like; Belongs to the LysR transcriptional regulatory family.
  
     0.720
AEB82512.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_5369 putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.712
AEB82688.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.710
AEB83314.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.710
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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