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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85898.1PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type. (352 aa)    
Predicted Functional Partners:
AEB86913.1
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
     0.743
AEB85897.1
KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp.
 
    0.700
AEB83180.1
PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type.
 
  
 
0.672
AEB86934.1
PFAM: Porin, Gram-negative type; KEGG: vei:Veis_0301 porin.
  
  
 
0.672
AEB86592.1
Porin; KEGG: vap:Vapar_4252 porin.
  
  
 
0.668
AEB83934.1
PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin.
  
  
 
0.661
AEB86449.1
Porin; KEGG: ajs:Ajs_3751 porin.
  
  
 
0.661
AEB85858.1
Manually curated; KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein.
  
  
 
0.660
AEB83179.1
Porin; KEGG: aav:Aave_0932 porin.
  
  
 
0.650
AEB84508.1
PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein.
  
     0.648
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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