Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB85898.1PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type. (352 aa)    
Predicted Functional Partners:
AEB86913.1
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
   
 0.753
AEB85897.1
KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp.
 
    0.701
AEB82474.1
PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein.
  
 
 0.657
AEB82676.1
PFAM: O-antigen ligase-related; KEGG: ajs:Ajs_0184 O-antigen polymerase.
  
    0.649
AEB84508.1
PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein.
  
     0.648
AEB84866.1
PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11.
  
     0.636
AEB86057.1
PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3404 NUDIX hydrolase.
  
     0.624
AEB83945.1
PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS.
  
    0.608
AEB82486.1
PFAM: Outer membrane efflux protein; KEGG: xtr:100485479 hypothetical protein LOC100485479.
  
  
 0.578
AEB84054.1
Putative solute symporter protein; TIGRFAM: Sodium symporter small subunit, predicted; KEGG: ajs:Ajs_2878 hypothetical protein.
 
    0.570
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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