STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB85903.1Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2458 ABC transporter related; SMART: ATPase, AAA+ type, core. (220 aa)    
Predicted Functional Partners:
AEB84932.1
PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2312 protein of unknown function DUF214.
 
 0.973
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
     
 0.823
AEB85905.1
PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2460 protein of unknown function DUF214.
 
 
 0.813
AEB85901.1
PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter.
     
 0.796
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
 
   
 0.733
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.730
AEB83508.1
Manually curated; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; KEGG: dia:Dtpsy_2755 lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease.
  
 
 0.703
AEB84304.1
PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ppd:Ppro_3850 hypothetical protein.
  
 
 0.680
AEB84686.1
PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214.
  
 
 0.680
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.678
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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