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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86056.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3178 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (313 aa)    
Predicted Functional Partners:
AEB86981.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.750
AEB86055.1
PFAM: Bile acid:sodium symporter; KEGG: dia:Dtpsy_2738 hypothetical protein.
  
    0.644
AEB83750.1
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: axy:AXYL_05357 LysR family regulatory helix-turn-helix protein 171.
  
     0.525
AEB84722.1
Transcriptional regulator, LysR family; PFAM: LysR, substrate-binding; KEGG: hmg:100212933 similar to lysR transcriptional regulator.
  
     0.458
AEB84468.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.411
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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