Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB86057.1PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3404 NUDIX hydrolase. (272 aa)    
Predicted Functional Partners:
AEB86058.1
NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase.
       0.773
AEB85898.1
PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type.
  
     0.624
AEB83827.1
PFAM: Fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase.
  
  
 0.602
AEB84866.1
PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11.
  
     0.582
AEB84769.1
PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB.
  
     0.576
AEB86059.1
Protein of unknown function DUF6 transmembrane; KEGG: ajs:Ajs_3406 hypothetical protein; manually curated; PFAM: Drug/metabolite transporter.
  
    0.568
AEB86475.1
TIGRFAM: Hydroxymethylglutaryl-CoA reductase, bacterial type; KEGG: xtr:100492358 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like; PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II; Belongs to the HMG-CoA reductase family.
  
  
 0.538
AEB85761.1
KEGG: dia:Dtpsy_2242 putative metal dependent phosphohydrolase.
  
     0.537
AEB82486.1
PFAM: Outer membrane efflux protein; KEGG: xtr:100485479 hypothetical protein LOC100485479.
  
     0.497
AEB83853.1
TIGRFAM: Squalene/phytoene synthase HpnD; KEGG: dia:Dtpsy_1121 squalene synthase HpnD; PFAM: Squalene/phytoene synthase.
  
  
 0.491
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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