STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86061.1PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit. (355 aa)    
Predicted Functional Partners:
AEB86060.1
TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted.
     
 0.775
AEB86062.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR.
     
 0.774
AEB83063.1
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ.
 
  
 0.578
AEB84896.1
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component.
 
  
 0.493
AEB86063.1
PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein.
     
 0.448
AEB86064.1
KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468.
       0.426
AEB83917.1
KEGG: bbr:BB0622 hypothetical protein.
 
  
 0.416
AEB83450.1
PFAM: Major facilitator superfamily MFS-1; KEGG: rfr:Rfer_4176 major facilitator transporter.
 
   
 0.415
AEB83645.1
Protein of unknown function DUF6 transmembrane; PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2650 hypothetical protein.
  
   
 0.415
AEB83518.1
KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase.
 
  
 0.413
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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