Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AEB86083.1KEGG: mno:Mnod_4051 hypothetical protein. (138 aa)    
Predicted Functional Partners:
AEB86082.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.800
AEB84408.1
TIGRFAM: Tape measure domain; KEGG: dia:Dtpsy_3197 phage tape measure protein.
  
  
 0.774
AEB86304.1
GPW/gp25 family protein; PFAM: GPW/gp25; KEGG: cag:Cagg_1491 gpW/GP25 family protein.
  
  
 0.647
AEB84394.1
KEGG: mms:mma_2706 hypothetical protein.
  
  
 0.606
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.514
AEB86307.1
KEGG: nde:NIDE2231 hypothetical protein.
  
  
 0.457
AEB84399.1
KEGG: dia:Dtpsy_3205 hypothetical protein.
  
  
 0.431
AEB86318.1
KEGG: nha:Nham_0832 phage tail sheath protein.
  
  
 0.431
bamB
Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.423
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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