STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86114.1PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase. (174 aa)    
Predicted Functional Partners:
AEB86113.1
Cupin, JmjC-type; KEGG: dia:Dtpsy_0920 cupin 4 family protein; PFAM: Cupin, JmjC-type; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase.
       0.616
AEB86112.1
KEGG: dia:Dtpsy_0921 hypothetical protein.
       0.586
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
  
 0.578
AEB83478.1
PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type.
  
   
 0.532
AEB85013.1
Thioredoxin; KEGG: vap:Vapar_2323 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.
  
 
 0.462
AEB83849.1
Ribonuclease BN; KEGG: dia:Dtpsy_1119 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related.
  
     0.417
AEB85034.1
PFAM: RNA-binding, CRM domain; KEGG: dia:Dtpsy_1473 protein of unknown function UPF0044.
  
    0.411
AEB85025.1
KEGG: dia:Dtpsy_1483 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase.
 
    0.410
AEB85284.1
TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: aav:Aave_2572 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase.
  
    0.407
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
  
 0.403
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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