Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86195.1KEGG: psa:PST_0617 glycosyl hydrolase. (357 aa)    
Predicted Functional Partners:
AEB86196.1
KEGG: psa:PST_0618 transporter, putative.
 
  
 0.964
AEB86194.1
PFAM: Protein of unknown function DUF1329; KEGG: lch:Lcho_2163 hypothetical protein.
 
  
 0.928
AEB86193.1
PFAM: Protein of unknown function DUF1302; KEGG: lch:Lcho_2162 hypothetical protein.
 
    0.924
AEB86197.1
PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: dac:Daci_1990 hypothetical protein.
 
     0.615
AEB86192.1
ATP-dependent transcriptional regulator, MalT-like, LuxR family; KEGG: reu:Reut_B3844 regulatory protein, LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
 
     0.538
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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