STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86235.1KEGG: ajs:Ajs_3559 hypothetical protein. (395 aa)    
Predicted Functional Partners:
AEB86243.1
KEGG: ajs:Ajs_3556 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
 
    0.840
AEB86234.1
PFAM: Bacterial surface antigen (D15); KEGG: dia:Dtpsy_2883 surface antigen (D15).
       0.838
AEB86233.1
PFAM: Protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein.
       0.667
AEB84597.1
ATPase associated with various cellular activities AAA_5; KEGG: dac:Daci_2251 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
 
    0.614
AEB86636.1
KEGG: ctt:CtCNB1_3512 ATPase associated with various cellular; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core.
 
    0.596
AEB86236.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein.
       0.566
AEB86237.1
PFAM: Crotonase, core; KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein.
       0.566
AEB86238.1
KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.
       0.555
AEB86239.1
KEGG: sti:Sthe_3003 formyl-CoA transferase; PFAM: CoA-transferase family III.
       0.531
AEB86240.1
KEGG: bpy:Bphyt_0617 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated.
       0.531
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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