Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86240.1KEGG: bpy:Bphyt_0617 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated. (259 aa)    
Predicted Functional Partners:
AEB86239.1
KEGG: sti:Sthe_3003 formyl-CoA transferase; PFAM: CoA-transferase family III.
       0.773
AEB86238.1
KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal.
       0.737
AEB86236.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein.
       0.730
AEB86237.1
PFAM: Crotonase, core; KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein.
       0.721
AEB84081.1
Transcriptional regulator, GntR family with UTRA sensor domain; TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: ctt:CtCNB1_0165 transcriptional regulator, histidine; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR.
  
     0.648
AEB84088.1
PFAM: Uncharacterised protein family HutD; KEGG: aav:Aave_2962 hypothetical protein.
  
  
 0.614
AEB85555.1
KEGG: bbr:BB0548 LacI family regulatory protein; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI.
  
   
 0.562
AEB85232.1
GntR domain protein; KEGG: ctt:CtCNB1_0240 GntR-like protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
  
  
 0.537
AEB82502.1
AraC protein arabinose-binding/dimerization; KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain.
  
  
 0.536
AEB82693.1
Cupin 2 conserved barrel domain protein; KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain.
  
  
 0.536
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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