STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86243.1KEGG: ajs:Ajs_3556 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core. (280 aa)    
Predicted Functional Partners:
AEB86235.1
KEGG: ajs:Ajs_3559 hypothetical protein.
 
    0.840
AEB86242.1
KEGG: dia:Dtpsy_2881 GCN5-related N-acetyltransferase.
       0.783
AEB86244.1
PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2878 cytochrome c class I.
       0.573
AEB85390.1
Lysine decarboxylase; KEGG: ajs:Ajs_2762 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal.
   
 
 0.427
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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