Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86258.1MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: vei:Veis_4268 MmgE/PrpD family protein. (477 aa)    
Predicted Functional Partners:
AEB86263.1
KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; PFAM: Isocitrate lyase/phosphorylmutase.
 
  
 0.873
AEB86259.1
PFAM: PrpF protein; KEGG: cak:Caul_0497 hypothetical protein.
 
  
 0.857
AEB86257.1
KEGG: vap:Vapar_4085 hypothetical protein.
       0.779
AEB83878.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B2639 hypothetical protein.
  
     0.774
AEB86260.1
KEGG: pol:Bpro_2294 hypothetical protein.
       0.768
AEB84232.1
KEGG: bbr:BB4339 hypothetical protein.
  
     0.761
AEB86261.1
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.708
AEB86262.1
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.708
AEB86256.1
KEGG: vap:Vapar_4972 hypothetical protein.
       0.701
AEB83471.1
PFAM: Isocitrate lyase/phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase.
 
  
 0.595
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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