STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86259.1PFAM: PrpF protein; KEGG: cak:Caul_0497 hypothetical protein. (392 aa)    
Predicted Functional Partners:
AEB86258.1
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: vei:Veis_4268 MmgE/PrpD family protein.
    0.851
AEB86263.1
KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; PFAM: Isocitrate lyase/phosphorylmutase.
  
  
 0.817
AEB86257.1
KEGG: vap:Vapar_4085 hypothetical protein.
       0.781
AEB86260.1
KEGG: pol:Bpro_2294 hypothetical protein.
       0.770
AEB86262.1
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
     
 0.714
AEB86261.1
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.710
AEB86256.1
KEGG: vap:Vapar_4972 hypothetical protein.
       0.703
AEB84474.1
TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: dia:Dtpsy_2080 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel.
 
  
 0.686
AEB86936.1
Precorrin 3B synthase CobZ; KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobZ, precorrin 3B synthase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.
 
    0.655
AEB86599.1
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding.
 
    0.555
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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