STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86272.1KEGG: ajs:Ajs_3539 biotin synthesis protein BioC. (302 aa)    
Predicted Functional Partners:
AEB83001.1
PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
    
 0.907
AEB83669.1
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
    
 0.907
AEB83577.1
Protein of unknown function DUF498; PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3; KEGG: dia:Dtpsy_2561 protein of unknown function DUF498.
  
     0.749
AEB82976.1
PFAM: Protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185.
  
    0.693
AEB86246.1
PFAM: Protein of unknown function DUF1841; KEGG: ajs:Ajs_3553 hypothetical protein.
 
     0.678
AEB86271.1
PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_3540 ComF family protein.
  
  
 0.674
AEB83329.1
KEGG: dia:Dtpsy_0798 hypothetical protein.
 
  
 0.636
AEB83507.1
PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: dia:Dtpsy_2757 hypothetical protein.
  
     0.551
trmL
tRNA/rRNA methyltransferase (SpoU); Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
     
 0.543
AEB85865.1
PFAM: Protein of unknown function DUF3579; KEGG: dia:Dtpsy_2428 hypothetical protein.
  
     0.516
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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