Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AEB86312.1KEGG: scl:sce2110 hypothetical protein. (845 aa)    
Predicted Functional Partners:
AEB86313.1
AAA ATPase central domain protein; KEGG: nde:NIDE2224 putative ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
 
     0.952
AEB86314.1
KEGG: nde:NIDE2223 hypothetical protein.
 
     0.952
AEB86316.1
KEGG: scl:sce2087 hypothetical protein.
 
     0.952
AEB86317.1
KEGG: cag:Cagg_1504 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Bacteriophage T4, Gp19, tail tube.
 
     0.944
AEB86318.1
KEGG: nha:Nham_0832 phage tail sheath protein.
 
     0.938
AEB86306.1
PFAM: Phage baseplate assembly protein V; KEGG: nde:NIDE2232 hypothetical protein.
 
     0.884
AEB86309.1
KEGG: nde:NIDE2229 hypothetical protein.
 
     0.884
AEB86304.1
GPW/gp25 family protein; PFAM: GPW/gp25; KEGG: cag:Cagg_1491 gpW/GP25 family protein.
 
     0.883
AEB86308.1
KEGG: aba:Acid345_0855 hypothetical protein.
 
     0.881
AEB86301.1
KEGG: cag:Cagg_1488 hypothetical protein.
 
     0.879
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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