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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86359.1PFAM: Auxin efflux carrier; KEGG: dia:Dtpsy_0901 auxin efflux carrier. (305 aa)    
Predicted Functional Partners:
AEB83739.1
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: ajs:Ajs_1112 malic enzyme; SMART: Malic enzyme, NAD-binding.
  
  
 0.666
AEB87004.1
KEGG: dia:Dtpsy_3465 malic enzyme; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding.
  
  
 0.666
AEB83531.1
KEGG: dia:Dtpsy_1006 hypothetical protein.
  
     0.577
AEB86360.1
KEGG: dia:Dtpsy_0902 hypothetical protein.
       0.499
AEB82797.1
KEGG: dia:Dtpsy_0288 hypothetical protein.
  
     0.468
AEB86010.1
KEGG: dia:Dtpsy_2705 hypothetical protein.
 
     0.460
AEB86893.1
PFAM: Protein of unknown function DUF1289; KEGG: dia:Dtpsy_3379 protein of unknown function DUF1289.
 
     0.459
AEB83169.1
KEGG: ajs:Ajs_0672 hypothetical protein.
  
     0.442
xerD
Tyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.432
AEB83165.1
KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein.
  
     0.428
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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