Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB86393.1KEGG: gpb:HDN1F_32180 hypothetical protein. (76 aa)    
Predicted Functional Partners:
AEB84112.1
KEGG: tmz:Tmz1t_1021 hypothetical protein.
  
     0.583
AEB86392.1
KEGG: dia:Dtpsy_2994 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal.
       0.551
AEB84712.1
Hydroxylamine reductase; KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: Cytochrome c, class I.
  
     0.525
AEB84718.1
KEGG: dia:Dtpsy_1717 hydroxylamine reductase; PFAM: Cytochrome c, class I.
  
     0.507
AEB86394.1
KEGG: dac:Daci_1875 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain.
       0.458
AEB86395.1
TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Signal transduction response regulator, receiver domain; KEGG: dac:Daci_1874 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain.
       0.458
AEB84717.1
KEGG: dia:Dtpsy_1716 hypothetical protein.
  
    0.432
AEB84716.1
KEGG: ajs:Ajs_1910 cytochrome d1, heme region.
  
    0.428
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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