Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86417.1Formyl-CoA transferase; KEGG: dac:Daci_3513 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (389 aa)    
Predicted Functional Partners:
AEB86418.1
Amidohydrolase 2; KEGG: dac:Daci_3514 amidohydrolase 2; manually curated; PFAM: Amidohydrolase 2.
       0.779
AEB86419.1
KEGG: dac:Daci_3515 hypothetical protein.
  
    0.729
AEB86416.1
KEGG: dac:Daci_3512 hypothetical protein.
  
    0.588
AEB86415.1
Citryl-CoA lyase; KEGG: xtr:100489146 citrate lyase subunit beta-like; PFAM: Aldehyde-lyase domain; Belongs to the HpcH/HpaI aldolase family.
  
    0.579
AEB86414.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3510 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.481
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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