Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB86449.1Porin; KEGG: ajs:Ajs_3751 porin. (339 aa)    
Predicted Functional Partners:
AEB86913.1
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
   
 0.613
AEB83180.1
PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type.
  
  
 
0.546
AEB85222.1
TfoX domain-containing protein; PFAM: TfoX, N-terminal; KEGG: dia:Dtpsy_1810 hypothetical protein.
 
     0.539
AEB83934.1
PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin.
  
  
 
0.531
AEB83179.1
Porin; KEGG: aav:Aave_0932 porin.
  
  
 
0.528
AEB85898.1
PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type.
  
  
 
0.528
AEB83236.1
PFAM: VacJ-like lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein.
   
 
 0.520
AEB86934.1
PFAM: Porin, Gram-negative type; KEGG: vei:Veis_0301 porin.
  
  
 
0.518
AEB84508.1
PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein.
  
     0.506
AEB83427.1
KEGG: dac:Daci_1840 putative lipoprotein.
  
   
 0.494
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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