Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86454.1Cyclic nucleotide-binding protein; KEGG: dac:Daci_5960 CBS domain-containing protein; PFAM: Domain of unknown function DUF294, nucleotidyltransferase putative; Cystathionine beta-synthase, core; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: Cystathionine beta-synthase, core; Cyclic nucleotide-binding domain. (604 aa)    
Predicted Functional Partners:
AEB86453.1
KEGG: pna:Pnap_0481 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease.
 
  
 0.988
AEB86452.1
KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.921
AEB86451.1
PFAM: Protein of unknown function DUF485; KEGG: dac:Daci_5956 hypothetical protein.
 
  
 0.919
AEB84055.1
Putative sodium symporter protein; KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein; TIGRFAM: Sodium/solute symporter, VC2705 subfamily; PFAM: Sodium/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.853
AEB86455.1
PFAM: DSBA-like thioredoxin domain; KEGG: dac:Daci_5961 DsbA oxidoreductase.
       0.797
AEB86456.1
KEGG: dia:Dtpsy_3035 protein of unknown function DUF1289; manually curated; PFAM: Protein of unknown function DUF1289.
       0.757
AEB86457.1
PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region.
       0.722
AEB86458.1
KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase.
       0.709
AEB83225.1
KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
     
 0.501
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.488
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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