STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEB86465.1KEGG: dia:Dtpsy_3046 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain. (352 aa)    
Predicted Functional Partners:
AEB86466.1
PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein.
     
 0.597
AEB86464.1
Long-chain-fatty-acid--CoA ligase; KEGG: ajs:Ajs_3764 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase.
     
 0.536
AEB86462.1
PFAM: Crotonase, core; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase.
     
 0.532
AEB86407.1
Beta-lactamase domain protein; Manually curated; PFAM: Beta-lactamase-like; NUDIX hydrolase domain; KEGG: dia:Dtpsy_3001 beta-lactamase domain protein; SMART: Beta-lactamase-like.
  
     0.528
AEB86463.1
KEGG: dia:Dtpsy_3044 propionyl-CoA carboxylase; PFAM: Carboxyl transferase.
     
 0.526
AEB86461.1
KEGG: dia:Dtpsy_3041 putative transmembrane protein.
  
  
 0.514
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.498
AEB86460.1
Methylcrotonoyl-CoA carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase, alpha subunit; SMART: Biotin carboxylase, C-terminal.
       0.486
AEB86870.1
Regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; KEGG: ajs:Ajs_4000 MarR family transcriptional regulator.
  
  
 0.470
AEB86561.1
KEGG: dia:Dtpsy_3124 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1.
 
   
 0.453
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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