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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86474.1KEGG: ctt:CtCNB1_3118 transcriptional regulator, GntR family; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR. (462 aa)    
Predicted Functional Partners:
AEB86475.1
TIGRFAM: Hydroxymethylglutaryl-CoA reductase, bacterial type; KEGG: xtr:100492358 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like; PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II; Belongs to the HMG-CoA reductase family.
 
     0.631
AEB86554.1
PFAM: Drug/metabolite transporter; KEGG: vap:Vapar_0746 protein of unknown function DUF6 transmembrane.
 
   
 0.484
AEB84623.1
Aspartate transaminase; KEGG: dia:Dtpsy_2259 aminotransferase; PFAM: Aminotransferase, class I/classII.
 
 
 0.429
AEB83751.1
KEGG: axy:AXYL_05358 2,2-dialkylglycine decarboxylase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.412
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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