Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86485.1KEGG: aav:Aave_4364 peptidase E; PFAM: Peptidase S51; Belongs to the peptidase S51 family. (234 aa)    
Predicted Functional Partners:
AEB86487.1
PFAM: Uncharacterised protein family AroM; KEGG: axy:AXYL_04087 AroM family protein.
 
     0.856
AEB86484.1
Transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: axy:AXYL_04090 transcriptional regulator family protein 21.
 
     0.842
AEB86486.1
PFAM: Protein of unknown function DUF1177; KEGG: axy:AXYL_04088 hypothetical protein.
 
   
 0.837
AEB86769.1
PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel.
 
     0.589
AEB86488.1
KEGG: axy:AXYL_04086 extra-cytoplasmic solute receptor family protein 94.
       0.586
AEB85432.1
KEGG: rme:Rmet_3794 putative TetR family transcriptional regulator.
  
     0.456
AEB82546.1
KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent); PFAM: Homocysteine S-methyltransferase.
    
   0.428
AEB86483.1
PFAM: Protein of unknown function DUF421; KEGG: aav:Aave_4363 hypothetical protein.
       0.411
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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