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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86582.1PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_0033 TetR family transcriptional regulator. (235 aa)    
Predicted Functional Partners:
AEB86578.1
PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0029 extracellular ligand-binding receptor.
 
     0.705
AEB86576.1
KEGG: dac:Daci_0027 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase.
 
   
 0.678
AEB83861.1
PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_4464 TetR family transcriptional regulator.
  
     0.627
AEB86579.1
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: rfr:Rfer_4064 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.606
AEB86580.1
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease; KEGG: dac:Daci_0031 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.598
AEB86581.1
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dac:Daci_0032 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
       0.531
AEB86577.1
ABC transporter related protein; KEGG: xtr:100489501 high-affinity branched-chain amino acid transport ATP-binding protein livF-like; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
       0.524
AEB86575.1
PFAM: Crotonase, core; KEGG: dac:Daci_0026 enoyl-CoA hydratase/isomerase.
 
   
 0.507
AEB84024.1
PFAM: Transcription regulator YsiA, C-terminal; KEGG: azc:AZC_4590 transcriptional regulator.
  
     0.461
AEB86574.1
acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0032 beta-ketothiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.443
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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