Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB86592.1Porin; KEGG: vap:Vapar_4252 porin. (380 aa)    
Predicted Functional Partners:
AEB86913.1
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
   
 0.696
AEB82837.1
KEGG: ajs:Ajs_3893 hypothetical protein.
  
     0.676
AEB85617.1
KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin.
  
     0.656
AEB85016.1
KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein.
  
     0.624
AEB86591.1
Ureidoglycolate lyase; KEGG: reu:Reut_B4678 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like.
       0.568
AEB86160.1
KEGG: dia:Dtpsy_2944 histone protein.
  
     0.542
AEB85898.1
PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type.
  
  
 
0.537
AEB83828.1
Protein of unknown function DUF540; PFAM: Uncharacterised protein family CysZ; KEGG: dia:Dtpsy_1107 putative transmembrane protein.
  
     0.534
AEB83934.1
PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin.
  
  
 
0.534
AEB86885.1
TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: dia:Dtpsy_3368 hypothetical protein.
  
     0.529
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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