STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86622.1Hypothetical protein; KEGG: pna:Pnap_4724 transposase. (252 aa)    
Predicted Functional Partners:
AEB86621.1
PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein.
 
  
 0.699
AEB82856.1
KEGG: pol:Bpro_2745 putative transposase.
  
     0.669
AEB83040.1
KEGG: pol:Bpro_2745 putative transposase.
  
     0.669
AEB85122.1
KEGG: pol:Bpro_2745 putative transposase.
  
     0.669
AEB85895.1
KEGG: pol:Bpro_2745 putative transposase.
  
     0.669
AEB86619.1
KEGG: pol:Bpro_2745 putative transposase.
  
     0.669
AEB85701.1
PFAM: Transposase, IS4-like; KEGG: pol:Bpro_4722 IS4 family transposase.
 
  
 0.521
AEB86653.1
PFAM: Transposase, IS4-like; KEGG: pol:Bpro_1661 IS4 family transposase.
 
  
 0.505
AEB85740.1
KEGG: dia:Dtpsy_2222 ISRSO5-transposase protein.
  
     0.498
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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