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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86655.1Integrase family protein; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: tmz:Tmz1t_0370 integrase family protein; Belongs to the 'phage' integrase family. (331 aa)    
Predicted Functional Partners:
AEB86654.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: tmz:Tmz1t_0371 integrase family protein.
 
    
0.840
AEB85784.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: glo:Glov_1428 integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.711
AEB84528.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: bpt:Bpet1499 putative integrase/recombinase.
  
     0.699
AEB86656.1
PFAM: Transposase, IS801/IS1294; KEGG: pol:Bpro_4805 putative transposase.
 
     0.506
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
0.473
AEB85126.1
PRTRC system ParB family protein; TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease; Belongs to the ParB family.
 
  
 0.452
AEB86035.1
KEGG: ajs:Ajs_3382 DNA translocase FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma.
 
   
 0.447
AEB85635.1
PRTRC system ParB family protein; TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease; Belongs to the ParB family.
 
  
 0.445
AEB82499.1
TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB-like nuclease; Belongs to the ParB family.
 
  
 0.408
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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