Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86707.1PFAM: Site-specific recombinase Gcr; KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein. (662 aa)    
Predicted Functional Partners:
apaG
Protein ApaG; KEGG: dia:Dtpsy_0349 ApaG; HAMAP: Uncharacterised protein family ApaG; PFAM: ApaG domain.
       0.842
AEB82774.1
VanZ family protein; PFAM: VanZ-like; KEGG: ajs:Ajs_0269 VanZ family protein.
 
     0.749
AEB86705.1
TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: dia:Dtpsy_0350 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.627
argS
TIGRFAM: Arginyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_0343 arginyl-tRNA synthetase.
   
    0.620
AEB83238.1
KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.619
AEB86708.1
PFAM: Cation/H+ exchanger; KEGG: dia:Dtpsy_0347 sodium/hydrogen exchanger.
 
     0.567
AEB86709.1
Carboxylate-amine ligase ybdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
 
     0.552
AEB83329.1
KEGG: dia:Dtpsy_0798 hypothetical protein.
  
     0.515
AEB84036.1
HemY domain protein; PFAM: HemY, N-terminal; KEGG: ajs:Ajs_2893 HemY domain-containing protein.
  
     0.499
AEB86233.1
PFAM: Protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein.
 
     0.492
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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