STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86712.1KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein. (158 aa)    
Predicted Functional Partners:
AEB86713.1
KEGG: lch:Lcho_2905 Tfp pilus assembly protein FimT.
 
  
 0.949
AEB86714.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: lch:Lcho_2906 hypothetical protein.
 
  
 0.945
AEB86715.1
KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW.
 
  
 0.945
AEB86717.1
KEGG: mep:MPQ_2531 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
 
  
 0.927
AEB86716.1
KEGG: lch:Lcho_2908 type IV pilus assembly protein PilX.
  
  
 0.877
AEB83603.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: dac:Daci_5194 type IV pilus modification protein PilV.
 
  
 0.851
AEB83213.1
PFAM: Fimbrial assembly; KEGG: ajs:Ajs_0731 fimbrial assembly family protein.
 
  
 0.807
AEB83214.1
KEGG: ajs:Ajs_0732 pilus assembly protein, PilO.
 
  
 0.785
AEB83215.1
PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP.
  
  
 0.785
AEB83216.1
TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal.
 
   
 0.785
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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