STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86789.1KEGG: pna:Pnap_1828 hypothetical protein. (519 aa)    
Predicted Functional Partners:
AEB86788.1
PFAM: Outer membrane protein, OmpW; KEGG: pna:Pnap_1827 OmpW family protein.
 
     0.778
AEB83602.1
KEGG: dac:Daci_5195 hypothetical protein.
  
     0.660
AEB82759.1
Protein of unknown function DUF330; KEGG: ajs:Ajs_0253 putative lipoprotein; manually curated; PFAM: Protein of unknown function DUF330.
  
     0.636
AEB85566.1
PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein.
  
    0.611
AEB84319.1
KEGG: bxe:Bxe_C1205 putative superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; SMART: Rhodanese-like.
 
  
 0.585
AEB83169.1
KEGG: ajs:Ajs_0672 hypothetical protein.
  
     0.576
AEB82646.1
Peptidase C1A papain; KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal.
  
     0.573
AEB86873.1
PFAM: Protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein.
  
     0.554
AEB83167.1
PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L.
  
     0.545
AEB86790.1
TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
       0.545
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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