Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86824.1KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel. (735 aa)    
Predicted Functional Partners:
AEB86823.1
KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein.
 
  
 0.857
AEB82995.1
HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_0512 putative hydroxylase; SMART: Prolyl 4-hydroxylase, alpha subunit.
 
  
 0.826
AEB85980.1
PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_2688 TonB-dependent receptor.
 
  
 0.720
AEB85572.1
PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_1842 TonB-dependent receptor.
 
  
 0.690
AEB85975.1
PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug.
 
  
 0.583
AEB85730.1
PFAM: Outer membrane efflux protein; KEGG: dia:Dtpsy_2209 outer membrane efflux protein.
  
 
 0.502
AEB86825.1
KEGG: dia:Dtpsy_3314 peptidylprolyl isomerase, FKBP-type.
       0.501
AEB84644.1
PFAM: Major facilitator superfamily MFS-1; KEGG: aav:Aave_2285 major facilitator superfamily transporter.
  
  
 0.440
AEB83180.1
PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type.
  
  
 0.436
AEB86879.1
Protein of unknown function DUF894 DitE; PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: dia:Dtpsy_3362 protein of unknown function DUF894 DitE.
  
  
 0.435
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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