STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86842.1SMART: DNA topoisomerase, type IA, DNA-binding; SWIB domain; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: ajs:Ajs_3990 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; SWIB/MDM2 domain; Toprim domain. (973 aa)    
Predicted Functional Partners:
AEB82551.1
TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: RQC domain; Helicase, C-terminal; DEAD-like helicase, N-terminal; Helicase/RNase D C-terminal, HRDC domain.
 
 0.915
AEB84147.1
SMART: DEAD-like helicase, N-terminal; KEGG: tmz:Tmz1t_0972 DEAD-like helicase.
  
 0.810
AEB84177.1
Manually curated; PFAM: SNF2-related; Helicase, C-terminal; KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.
  
 0.810
AEB84283.1
SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase.
  
 0.810
AEB85397.1
Hypothetical protein; Manually curated; KEGG: ecc:c5378 hypothetical protein.
  
 0.810
AEB86843.1
KEGG: dia:Dtpsy_3340 nuclear protein SET; PFAM: SET domain; SMART: SET domain; Post-SET domain.
 
 
 
 0.752
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.737
AEB83225.1
KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
  
  
 0.701
AEB85656.1
KEGG: ajs:Ajs_1571 putative DNA repair ATPase.
  
 0.701
AEB87014.1
SMC domain protein; PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_3475 SMC domain protein.
  
 0.701
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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