Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEB86931.1PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0298 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (328 aa)    
Predicted Functional Partners:
mnmA
tRNA-specific 2-thiouridylase mnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.773
AEB82681.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.764
AEB83632.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.719
AEB86932.1
PFAM: PrpF protein; KEGG: vei:Veis_0299 hypothetical protein.
 
  
 0.650
AEB86981.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.608
AEB86935.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    
0.512
AEB83753.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.503
AEB84722.1
Transcriptional regulator, LysR family; PFAM: LysR, substrate-binding; KEGG: hmg:100212933 similar to lysR transcriptional regulator.
  
     0.466
AEB86933.1
KEGG: vei:Veis_0300 hypothetical protein.
       0.448
AEB86929.1
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
     
 0.437
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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