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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB86932.1PFAM: PrpF protein; KEGG: vei:Veis_0299 hypothetical protein. (362 aa)    
Predicted Functional Partners:
AEB86936.1
Precorrin 3B synthase CobZ; KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobZ, precorrin 3B synthase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal.
 
    0.751
AEB86599.1
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding.
 
    0.673
AEB84474.1
TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: dia:Dtpsy_2080 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel.
 
  
 0.648
AEB86931.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0298 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.635
AEB86933.1
KEGG: vei:Veis_0300 hypothetical protein.
      0.620
AEB86818.1
PFAM: Amidohydrolase 2; KEGG: pol:Bpro_2147 amidohydrolase 2.
 
   
 0.570
mnmA
tRNA-specific 2-thiouridylase mnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.558
AEB86934.1
PFAM: Porin, Gram-negative type; KEGG: vei:Veis_0301 porin.
       0.557
AEB83383.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.539
AEB83778.1
Aconitate hydratase 1; TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: ajs:Ajs_1145 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel.
  
  
 0.539
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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