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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudJPFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_3425 NUDIX hydrolase; Belongs to the Nudix hydrolase family. NudJ subfamily. (161 aa)    
Predicted Functional Partners:
AEB86947.1
KEGG: dia:Dtpsy_3426 hypothetical protein.
       0.569
AEB86804.1
Xaa-Pro aminopeptidase; KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal.
 
   
 0.557
AEB83707.1
TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: ajs:Ajs_3236 putative transmembrane protein.
 
  
 0.528
AEB85535.1
PFAM: Type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ.
 
     0.525
AEB83662.1
PFAM: Protein of unknown function DUF177; KEGG: dia:Dtpsy_2636 protein of unknown function DUF177.
  
     0.505
cobD-2
Cobalamin biosynthesis protein CbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
    0.474
AEB84826.1
TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/classII.
 
    0.444
AEB86158.1
KEGG: dia:Dtpsy_2946 MJ0042 family finger-like protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426.
  
     0.441
AEB86885.1
TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: dia:Dtpsy_3368 hypothetical protein.
  
     0.429
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.414
Your Current Organism:
Alicycliphilus denitrificans
NCBI taxonomy Id: 596154
Other names: A. denitrificans K601, Alicycliphilus denitrificans DSM 14773, Alicycliphilus denitrificans K601, Alicycliphilus denitrificans str. K601, Alicycliphilus denitrificans strain K601, Pseudomonas sp. K601, beta proteobacterium K601
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