STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI70508.1Uncharacterized oxidoreductase MSMEG_2408. (372 aa)    
Predicted Functional Partners:
porA
Pyruvate synthase subunit porA.
  
 
  0.859
yhdN_2
General stress protein 69.
  
     0.736
adhR_1
HTH-type transcriptional regulator AdhR.
  
    0.563
pyrK_1
Dihydrdoorotate oxidase B%2C electron transfer subunit.
  
  0.509
pyrK_2
Dihydrdoorotate oxidase B%2C electron transfer subunit.
  
  0.509
adhR_2
HTH-type transcriptional regulator AdhR.
  
    0.505
SCI70111.1
NADH:ubiquinone oxidoreductase 24 kD subunit.
 
 
  0.443
SCJ10957.1
Uncharacterised ACR%2C YkgG family COG1556.
   
   0.411
Your Current Organism:
uncultured Clostridium sp.
NCBI taxonomy Id: 59620
Other names: Clostridium sp. 1C11, Clostridium sp. 1C4, Clostridium sp. 1C8, Clostridium sp. 1D10, Clostridium sp. 1G2, Clostridium sp. 2A9, u. Clostridium sp., uncultured Anaerobacter sp.
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